20173009
not annotated - annotated - LINNAEUS only
Nocardioides caricicola sp. nov., an endophytic bacterium isolated from a halophyte, Carex scabrifolia Steud.
A Gram-staining-positive, coccoid to rod-shaped bacterium, designated strain YC6903(T), was isolated from a halophytic plant (Carex scabrifolia Steud.) collected from sand dunes at Namhae Island, Korea, and its taxonomic position was investigated by using a polyphasic approach. Strain YC6903(T) grew optimally at 30 ^0C and at pH 8.0. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain YC6903(T) belongs to the genus Nocardioides in the family Nocardioidaceae. Strain YC6903(T) was related most closely to Nocardioides pyridinolyticus OS4(T) (97.0 % 16S rRNA gene sequence similarity), Nocardioides dokdonensis FR1436(T) (96.6 %), Nocardioides aquiterrae GW-9(T) (96.6 %) and Nocardioides hankookensis DS-30(T) (96.6 %). The cell-wall peptidoglycan contained LL-diaminopimelic acid and MK-8(H(4)) was the major respiratory quinone. The mean (+/-SD) level of DNA-DNA relatedness between strain YC6903(T) and N. pyridinolyticus OS4(T) was 53.5+/-5.5 %. The predominant cellular fatty acid of strain YC6903(T) was iso-C(16 : 0) (28.9 %). The DNA G+C content was 71.7 mol%. Phenotypic, phylogenetic and chemotaxonomic data indicated that strain YC6903(T) represents a novel species of the genus Nocardioides, for which the name Nocardioides caricicola sp. nov. is proposed. The type strain is YC6903(T) (=KACC 13778(T) =DSM 22177(T)).
Ann file
T1 Species 0 23 Nocardioides caricicola
N1 Reference T1 Taxonomy:634770
T2 Species 85 102 Carex scabrifolia
N2 Reference T2 Taxonomy:538521
T3 Species 189 195 YC6903
N3 Reference T3 Taxonomy:634770
T4 Species 238 255 Carex scabrifolia
N4 Reference T4 Taxonomy:538521
T5 Species 398 404 YC6903
N5 Reference T5 Taxonomy:634770
T6 Species 525 531 YC6903
N6 Reference T6 Taxonomy:634770
T7 Species 607 613 YC6903
N7 Reference T7 Taxonomy:634770
T8 Species 645 677 Nocardioides pyridinolyticus OS4
N8 Reference T8 Taxonomy:109465
T9 Species 725 756 Nocardioides dokdonensis FR1436
N9 Reference T9 Taxonomy:203799
T10 Species 770 798 Nocardioides aquiterrae GW-9
N10 Reference T10 Taxonomy:203799
T11 Species 815 846 Nocardioides hankookensis DS-30
N11 Reference T11 Taxonomy:443157
T12 Species 1032 1038 YC6903
N12 Reference T12 Taxonomy:634770
T13 Species 1046 1068 N. pyridinolyticus OS4
N13 Reference T13 Taxonomy:109465
T14 Species 1136 1142 YC6903
N14 Reference T14 Taxonomy:634770
T15 Species 1280 1286 YC6903
N15 Reference T15 Taxonomy:634770
T16 Species 1363 1386 Nocardioides caricicola
N16 Reference T16 Taxonomy:634770
T17 Species 1428 1434 YC6903
N17 Reference T17 Taxonomy:634770